From 2a79a5a671578ee29b53516a0f0475c32451e5d5 Mon Sep 17 00:00:00 2001
From: Ann Almgren <asalmgren@lbl.gov>
Date: Fri, 20 Sep 2019 12:57:28 -0700
Subject: [PATCH] update and remove unused files
---
docs/webroot/gallery.html | 22 +---
docs/webroot/help.html | 88 ---------------
docs/webroot/overview.html | 220 -------------------------------------
3 files changed, 1 insertion(+), 329 deletions(-)
delete mode 100644 docs/webroot/help.html
delete mode 100644 docs/webroot/overview.html
diff --git a/docs/webroot/gallery.html b/docs/webroot/gallery.html
index 48522e4..97aab5c 100644
--- a/docs/webroot/gallery.html
+++ b/docs/webroot/gallery.html
@@ -7,7 +7,7 @@
<html lang="en">
<head>
<meta charset="UTF-8">
- <title>AMReX: Gallery</title>
+ <title>MFiX-Exa: Gallery</title>
<link rel="icon" href="web_icon.ico" type="image/x-icon">
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="description" content="" />
@@ -25,31 +25,11 @@
</head>
<body>
- <!-- Header -->
- <header id="header">
- <h1><a href="index.html">AMReX</a></h1>
- <nav id="nav">
- <ul>
- <li><a href="overview.html">Overview</a></li>
- <li><a href="science.html">Science</a></li>
- <li><a href="gallery.html">Gallery</a></li>
- <li><a href="help.html" class="button special">Get Help</a></li>
- </ul>
- </nav>
- </header>
-
<!-- Main -->
<section id="main" class="wrapper">
<div class="container">
- <header class="major">
- <p>
- If you would like to contribute to our gallery,
- <a href="mailto:AJNonaka@lbl.gov?subject=AMReX Gallery">please contact us</a>.
- </p>
- </header>
-
<header class="major">
<h2>Microstructure Evolution Using Solid Mechanics</h2>
<p>Simulation of microstructure evolution in a polycrystalline solid using Alamo</p>
diff --git a/docs/webroot/help.html b/docs/webroot/help.html
deleted file mode 100644
index 865dbf8..0000000
--- a/docs/webroot/help.html
+++ /dev/null
@@ -1,88 +0,0 @@
-<!DOCTYPE html>
-<!--
- Transit by TEMPLATED
- templated.co @templatedco
- Released for free under the Creative Commons Attribution 3.0 license (templated.co/license)
--->
-<html lang="en">
- <head>
- <meta charset="UTF-8">
- <title>MFiX-Exa: Getting Help</title>
- <link rel="icon" href="web_icon.png" type="image/x-icon">
- <meta http-equiv="content-type" content="text/html; charset=utf-8" />
- <meta name="description" content="" />
- <meta name="keywords" content="" />
- <!--[if lte IE 8]><script src="js/html5shiv.js"></script><![endif]-->
- <script src="js/jquery.min.js"></script>
- <script src="js/skel.min.js"></script>
- <script src="js/skel-layers.min.js"></script>
- <script src="js/init.js"></script>
- <noscript>
- <link rel="stylesheet" href="css/skel.css" />
- <link rel="stylesheet" href="css/style.css" />
- <link rel="stylesheet" href="css/style-xlarge.css" />
- </noscript>
- </head>
- <body>
-
- <!-- Header -->
- <header id="header">
- <h1><a href="index.html">MFiX-Exa</a></h1>
- <nav id="nav">
- <ul>
- <li><a href="overview.html">Overview</a></li>
- <li><a href="science.html">Science</a></li>
- <li><a href="gallery.html">Gallery</a></li>
- <li><a href="help.html" class="button special">Get Help</a></li>
- </ul>
- </nav>
- </header>
-
- <!-- Footer -->
- <footer id="footer">
- <div class="container">
- <section class="links">
- <div class="row">
- <section class="4u 12u$(small)">
- <ul class="unstyled">
- <li><h3>Getting Help</h3></li>
- <li>To obtain help, simply post an issue in the
- <a href="https://github.com/AMReX-Codes/MFIX-Exa">MFIX-Exa GitHub webpage</a></li>
- </ul>
- </section>
-
- <section class="4u 12u$(small)">
- <ul class="unstyled">
- <li><h3>MFIX-Exa documentation</h3></li>
- <li>The <a href="https://amrex-codes.github.io/MFIX-Exa/docs_html">
- MFIX-Exa Documentation</a> contains a
- <em>Getting Started</em> guide and details on the code.</li>
- </ul>
- </section>
-
- </div>
- </section>
-
- <!-- Footer -->
- <footer id="footer">
- <div class="container">
- <section class="ack">
- MFIX-Exa is developed at
- <a href="https://www.netl.doe.gov/"> NETL </a>, and
- <a href="http://www.lbl.gov/"> LBNL </a>,
- <a href="http://www.colorado.edu/"> CU Boulder </a>
- as part of the MFIX-Exa Project in DOE's Exascale Computing Project.
- </section>
- <div class="row">
- <div class="8u 12u$(medium)">
- <ul class="copyright">
- <li>© MFIX-Exa development team. All rights reserved.</li>
- <li>Design: <a href="http://templated.co">TEMPLATED</a></li>
- </ul>
- </div>
- </div>
- </div>
- </footer>
-
- </body>
-</html>
diff --git a/docs/webroot/overview.html b/docs/webroot/overview.html
deleted file mode 100644
index 2aff401..0000000
--- a/docs/webroot/overview.html
+++ /dev/null
@@ -1,220 +0,0 @@
-<!DOCTYPE html>
-<!--
- Transit by TEMPLATED
- templated.co @templatedco
- Released for free under the Creative Commons Attribution 3.0 license (templated.co/license)
--->
-<html lang="en">
- <head>
- <meta charset="UTF-8">
- <title>AMReX: Overview</title>
- <link rel="icon" href="web_icon.ico" type="image/x-icon">
- <meta http-equiv="content-type" content="text/html; charset=utf-8" />
- <meta name="description" content="" />
- <meta name="keywords" content="" />
- <!--[if lte IE 8]><script src="js/html5shiv.js"></script><![endif]-->
- <script src="js/jquery.min.js"></script>
- <script src="js/skel.min.js"></script>
- <script src="js/skel-layers.min.js"></script>
- <script src="js/init.js"></script>
- <noscript>
- <link rel="stylesheet" href="css/skel.css" />
- <link rel="stylesheet" href="css/style.css" />
- <link rel="stylesheet" href="css/style-xlarge.css" />
- </noscript>
- </head>
- <body>
-
- <!-- Header -->
- <header id="header">
- <h1><a href="index.html">AMReX</a></h1>
- <nav id="nav">
- <ul>
- <li><a href="overview.html">Overview</a></li>
- <li><a href="science.html">Science</a></li>
- <li><a href="gallery.html">Gallery</a></li>
- <li><a href="help.html" class="button special">Get Help</a></li>
- </ul>
- </nav>
- </header>
-
- <!-- Main -->
- <section id="main" class="wrapper">
-
- <div class="container">
-
- <div class="row">
- <div id="sidebar" class="4u 12u$(small)">
- <section>
- <ul class="unstyled">
-
- <li><center><h3>AMReX at a Glance</h3></center>
- AMReX is a publicly available software framework
- designed for building massively parallel block-
- structured adaptive mesh refinement (AMR) applications.</li>
-
- <li><center><h3>Features</h3></center>
- <ul>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- C++ and Fortran interfaces</li>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- Support for cell-centered,
- face-centered, edge-centered, and nodal data</li>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- Support for hyperbolic, parabolic,
- and elliptic solves on hierarchical adaptive grid structure</li>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- Optional subcycling in time for time-dependent PDEs</li>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- Support for particles</li>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- Embedded boundary description of irregular geometry</li>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- Parallelization via flat MPI, OpenMP, hybrid MPI/OpenMP, or MPI/MPI</li>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- Parallel I/O</li>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- Plotfile format supported by Amrvis, VisIt, ParaView, and yt</li>
- <li style="margin-bottom: -15px; margin-left:20px; LINE-HEIGHT:25px">
- Built-in profiling tools</li>
- </ul>
- </li>
-
- <li><center><h3>Open Development Model</h3></center>
- All of AMReX's development is done
- in the github repository under the development branch;
- anyone can see the latest updates. Changes are merged into
- the master branch at the beginning of each month.</li>
-
- <li><center><h3>Contribute to AMReX</h3></center>
- We encourage users contribute to the AMReX source code.
- To contribute, issue a pull request against the
- <b>development</b> branch
- (<a href="https://help.github.com/articles/creating-a-pull-request/">details</a>).
- Any level of changes are welcomed:
- documentation, bug fixes, new test problems,
- new solvers, ...</li>
-
- <li><center><h3>Getting Help</h3></center>
- To obtain help, simply post an issue on the
- <a href="https://github.com/AMReX-Codes/amrex">AMReX GitHub webpage</a>
- </li>
- </ul>
- </section>
- </div>
-
- <div class="8u$ 12u$(small) important(small)">
-
- <div class="10u$ 12u$(small) important(small)">
-
- <header class="major">
- <h3>Why Block-Structured AMR?</h3>
- </header>
-
- Block-structured AMR provides a way to exploit varying resolution requirements
- in space and time by focusing computational resources in spatiotemporal
- regions of interest. Note that there is no parent-child relationship between
- coarser grids and finer grids as the grid structure dynamically evolves
- over time.<p><p>
-
- <center>
- <img src="images/KH.gif" style="width: 512px; height: 256px" alt="" ><p>
- </center>
-
- Depicted above is a Kelvin-Helmholtz instability using 3 total levels of
- refinement generated
- by the publicly available <b>IAMR</b> code
- (available <a href="https://github.com/AMReX-Codes/IAMR">HERE</a>)
- for solving the variable-density incompressible Navier-Stokes equations.
- <p><p>
-
- <header class="major">
- <h3>Particles</h3>
- </header>
-
- AMReX provides data structures and iterators for performing
- data-parallel particle simulations. Our approach is particularly
- suited to particles that interact with data defined on a
- (possibly adaptive) block-structured hierarchy of meshes. Example
- applications include Particle-in-Cell (PIC) simulations, Lagrangian
- tracers, or particles that exert drag forces onto a fluid, such as
- in multi-phase flow calculations.<p><p>
-
- <center>
- <img src="images/particles.gif" style="width: 347px; height: 456px" alt="" ><p>
- </center>
-
- Depicted above is granular material color coded according
- to their speed, falling into a bucket. This simulation was performed
- with the <b>MFiX-Exa</b> code developed by NETL, LBNL, and University
- of Colorado.<p><p>
-
- <header class="major">
- <h3>Embedded Boundaries</h3>
- </header>
-
- For computations with complex geometries, AMReX provides data structures
- and algorithms to employ an embedded boundary (EB) approach to PDE
- discretizations. In this approach, the underlying computational mesh
- is uniform and block-structured, but the boundary of the irregular-shaped
- computational domain conceptually cuts through this mesh.<p><p>
-
- <center>
- <img src="images/EmbeddedBoundaries.png" style="width: 347px; height: 456px" alt="" ><p>
- </center>
-
- Depicted above is a compressible high speed swirling jet conducted
- using the <b>PeleC</b> simulation code created by NREL & LBNL with
- the support of the Exascale Computing Project. Isosurface shows
- velocity magnitude.<p><p>
-
- <header class="major">
- <h3>Profiling Tools</h3>
- </header>
-
- AMReX-based application codes can be instrumented using AMReX-specific performance profiling tools that take into account the hierarchical nature of the mesh in most AMReX-based applications. These codes can be instrumented for varying levels of profiling detail.<p><p>
-
- <center>
- <img src="images/Profiling.png" style="width: 728px; height: 358px" alt="" ><p>
- </center>
-
- Depicted above is a sample output of the <b>ProfParser</b> tool, a
- command line application that can create performance summaries,
- plotfiles showing point to point communication and timelines,
- HTML call trees, communication call statistics, function timing
- graphs, and other data products. Read more in the
- <a href="https://amrex-codes.github.io/amrex/docs_html">Documentation.</a><p><p>
-
- </div>
-
- </div>
-
- </div>
-
- </section>
- <!-- End Main -->
-
- <!-- Footer -->
- <footer id="footer">
- <div class="container">
- <section class="ack">
- AMReX is developed at
- <a href="http://www.lbl.gov/"> LBNL </a>,
- <a href="https://www.nrel.gov/"> NREL </a>, and
- <a href="http://www.anl.gov/"> ANL </a>
- as part of the Block-Structured AMR Co-Design Center in DOE's
- Exascale Computing Project.
- </section>
- <div class="row">
- <div class="8u 12u$(medium)">
- <ul class="copyright">
- <li>© AMReX development team. All rights reserved.</li>
- <li>Design: <a href="http://templated.co">TEMPLATED</a></li>
- </ul>
- </div>
- </div>
- </div>
- </footer>
-
- </body>
-</html>
--
GitLab