Update docs

  • Alphabetize plot and monitor variables
  • Rewrite section on FlowRate monitors

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+21 −21
Changes for docs/source_docs/user_guide/inputs/output/checkpointing.rst: 21 added lines, 21 removed lines.
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@@ -5,29 +5,29 @@ Checkpointing

The following inputs must be preceded by the prefix ``mfix`` and control checkpoint/restart:

+-------------------------+-----------------------------------------------------------------------+-------------+------------+
+-------------------------+------------------------------------------------------------------------+-------------+------------------+
|                         | Description                                                            |   Type      | Default          |
+=========================+=======================================================================+=============+============+
| restart                 | If present, then the name of file to restart from                     |  String     | None       |
+-------------------------+-----------------------------------------------------------------------+-------------+------------+
| check_int               | Frequency of checkpoint output in number of timesteps;                |  Int        | -1         |
|                         | if -1 then no checkpoints will be written                             |             |            |
+-------------------------+-----------------------------------------------------------------------+-------------+------------+
| check_per_approx        | Frequency of checkpoint output in simulation time;                    |  Real       | 0          |
|                         | if 0 then no checkpoints will be written                              |             |            |
+-------------------------+-----------------------------------------------------------------------+-------------+------------+
| check_walltime_interval | Frequency of checkpoint output in runtime (HH:MM:SS)                  |  String     | None       |
+-------------------------+-----------------------------------------------------------------------+-------------+------------+
| check_file              | Prefix to use for checkpoint output                                   |  String     | chk        |
+-------------------------+-----------------------------------------------------------------------+-------------+------------+
+=========================+========================================================================+=============+==================+
| restart                 | If present, the name of file to restart from.                          |  String     | None             |
+-------------------------+------------------------------------------------------------------------+-------------+------------------+
| check_file              | Prefix to use for checkpoint output file name.                         |  String     | chk              |
+-------------------------+------------------------------------------------------------------------+-------------+------------------+
| check_int               | Checkpoint output interval in number of timesteps (0 to disable).      |  Int        | 0                |
+-------------------------+------------------------------------------------------------------------+-------------+------------------+
| check_per_approx        | Approximate checkpoint output interval in simulation time (0 to        |  Real       | 0                |
|                         | disable).                                                              |             |                  |
+-------------------------+------------------------------------------------------------------------+-------------+------------------+
| check_walltime_interval | Checkpoint output interval in elapsed run time (HH:MM:SS).  Only one   |  String     | None             |
|                         | of ``check_int``, ``check_per_approx``, or ``check_walltime_interval`` |             |                  |
|                         | may be specified.                                                      |             |                  |
+-------------------------+------------------------------------------------------------------------+-------------+------------------+
| geom_chk_write          | Write the EB geometry data into ``geom_chk_file`` and additionally,    |  Bool       | false            |
|                         | ``geom_levelset_chk_file`` if levelset refinement is enabled.          |             |                  |
|                         | refinement is enabled.                                                |             |            |
+-------------------------+-----------------------------------------------------------------------+-------------+------------+
+-------------------------+------------------------------------------------------------------------+-------------+------------------+
| geom_chk_file           | Name of the EB checkpoint file that is used to store or read           |  String     | geom_chk         |
|                         | the unrefined geometry.                                                |             |                  |
+-------------------------+-----------------------------------------------------------------------+-------------+------------+
| geom_levelset_chk_file  | Name of the EB checkpoint file that is used to store or read          |  String     | geom\_     |
|                         | the refined geometry, i.e. when levelset refinement is enabled.       |             | levelset\_ |
|                         |                                                                       |             | chk        |
+-------------------------+-----------------------------------------------------------------------+-------------+------------+
+-------------------------+------------------------------------------------------------------------+-------------+------------------+
| geom_levelset_chk_file  | Name of the EB checkpoint file that is used to store or read           |  String     | geom_levelset_chk|
|                         | the refined geometry, i.e. when levelset refinement is enabled.        |             |                  |
|                         |                                                                        |             |                  |
+-------------------------+------------------------------------------------------------------------+-------------+------------------+
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Changes for docs/source_docs/user_guide/inputs/geometry.rst: 2 added lines, 2 removed lines.
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@@ -8,7 +8,7 @@ The following inputs are defined using the prefix ``mfix``:
+------------------------+-------------------------------------------------------------------------------+----------+---------------------+
|                        | Description                                                                   |   Type   | Default             |
+========================+===============================================================================+==========+=====================+
| geometry               | Simulation geometry type.                                                     |   String | 'box'               |
| geometry               | Simulation geometry type.                                                     |   String |                     |
|                        | Options (case-insensitive):                                                   |          |                     |
|                        |                                                                               |          |                     |
|                        | * ``box`` - predefined :ref:`box geometry<InputsGeometry_box>`                |          |                     |
@@ -19,7 +19,7 @@ The following inputs are defined using the prefix ``mfix``:
|                        | * ``None`` - no embedded boundary -- all domain faces must be specified       |          |                     |
|                        |                                                                               |          |                     |
+------------------------+-------------------------------------------------------------------------------+----------+---------------------+
| levelset__refinement   | Refinement factor of levelset resolution relative to level 0                  |   Int    | 1                   |
| levelset_refinement    | Refinement factor of levelset resolution relative to level 0                  |   Int    | 1                   |
|                        | resolution                                                                    |          |                     |
+------------------------+-------------------------------------------------------------------------------+----------+---------------------+

+1 −1
Changes for docs/source_docs/user_guide/inputs/initial_conditions.rst: 1 added line, 1 removed line.
Original line number Diff line number Diff line
@@ -88,7 +88,7 @@ please refer to :ref:`ReferenceParticleDistributions <ReferenceParticleDistribut
+========================+=======================================================================+=============+===========+
| volfrac                | Volume fraction                                                       | Real        | 0         |
+------------------------+-----------------------------------------------------------------------+-------------+-----------+
| temperature            | temperature                                                           | Real        | 0         |
| temperature            | Temperature                                                           | Real        | 0         |
+------------------------+-----------------------------------------------------------------------+-------------+-----------+
| species.[species_name] | Mass fraction of `species_name`.  Must be a solid species.            | Real        | 0         |
+------------------------+-----------------------------------------------------------------------+-------------+-----------+
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